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brunoasm avatar

biogeobears

Set up and execute phylogenetic biogeographic analyses using BioGeoBEARS in R. Use when users request biogeographic reconstruction, ancestral range estimation, or want to analyze species distributions on phylogenies. Handles input file validation, data reformatting, RMarkdown workflow generation,...

brunoasmOpen Source
TheBushidoCollective avatar

biome-formatting

Use when formatting JavaScript/TypeScript code with Biome's fast formatter including patterns, optio

TheBushidoCollectiveOpen Source
SomtoUgeh avatar

biome-gritql

Creates and manages Biome GritQL custom lint rules to enforce coding patterns. Use when creating lin

SomtoUgehOpen Source
PaulRBerg avatar

biome-js

This skill should be used when the user asks to "configure Biome", "extend biome config", "set up BiomeJS", "add biome overrides", "biome lint-staged", "fix biome errors", or mentions biome.jsonc, Biome linting, or Biome formatting configuration.

PaulRBergOpen Source
TheBushidoCollective avatar

biome-linting

Use when applying Biome's linting capabilities, rule categories, and code quality enforcement to Jav

TheBushidoCollectiveOpen Source
tejovanthn avatar

biome-tooling

Using Biome for fast, unified code formatting and linting - a modern alternative to ESLint and Prett

tejovanthnOpen Source
K-Dense-AI avatar

biomni

Autonomous biomedical AI agent framework for executing complex research tasks across genomics, drug discovery, molecular biology, and clinical analysis. Use this skill when conducting multi-step biomedical research including CRISPR screening design, single-cell RNA-seq analysis, ADMET prediction,...

K-Dense-AIOpen Source
davila7 avatar

biomni

Autonomous biomedical AI agent framework for executing complex research tasks across genomics, drug discovery, molecular biology, and clinical analysis. Use this skill when conducting multi-step biomedical research including CRISPR screening design, single-cell RNA-seq analysis, ADMET prediction,...

davila7Open Source
K-Dense-AI avatar

biopython

Comprehensive molecular biology toolkit. Use for sequence manipulation, file parsing (FASTA/GenBank/PDB), phylogenetics, and programmatic NCBI/PubMed access (Bio.Entrez). Best for batch processing, custom bioinformatics pipelines, BLAST automation. For quick lookups use gget; for multi-service in...

K-Dense-AIOpen Source
davila7 avatar

biopython

Primary Python toolkit for molecular biology. Preferred for Python-based PubMed/NCBI queries (Bio.Entrez), sequence manipulation, file parsing (FASTA, GenBank, FASTQ, PDB), advanced BLAST workflows, structures, phylogenetics. For quick BLAST, use gget. For direct REST API, use pubmed-database.

davila7Open Source
K-Dense-AI avatar

biorxiv-database

Efficient database search tool for bioRxiv preprint server. Use this skill when searching for life sciences preprints by keywords, authors, date ranges, or categories, retrieving paper metadata, downloading PDFs, or conducting literature reviews.

K-Dense-AIOpen Source
davila7 avatar

biorxiv-database

Efficient database search tool for bioRxiv preprint server. Use this skill when searching for life sciences preprints by keywords, authors, date ranges, or categories, retrieving paper metadata, downloading PDFs, or conducting literature reviews.

davila7Open Source
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